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Get genomic features

Source: R/AllGenerics.R, R/getters-methods.R
features.Rd

Retrieves specific or all genomic features.

Usage

features(x, name)

# S4 method for class 'ChromatinContacts,character'
features(x, name)

# S4 method for class 'ChromatinContacts,missing'
features(x)

Arguments

x

ChromatinContacts object.

name

Character. Feature name: "compartments", "TADs", "loops", or "multi_contacts". If missing, returns all as SimpleList.

Value

GRanges (TADs, compartments, multi_contacts), GInteractions (loops), or SimpleList (all features).

Examples

if (FALSE) { # \dontrun{
tads <- features(cc, "TADs")
loops <- features(cc, "loops")
all_features <- features(cc)
} # }