Create a line plot showing how the fraction of bins meeting contact threshold changes with resolution.
Usage
plotCoverageCurve(
pairs,
bin_sizes = c(1000, 2000, 5000, 10000, 20000, 25000, 50000, 1e+05, 150000, 2e+05,
250000, 5e+05, 1e+06),
min_contacts = 1000,
title = "Genome Coverage by Resolution"
)Arguments
- pairs
A data frame or tibble with pairs data.
- bin_sizes
Integer vector of bin sizes to test. See plotResolutionCoverage.
- min_contacts
Integer minimum contacts threshold. Default: 1000.
- title
Character plot title.
Examples
if (FALSE) { # \dontrun{
p <- plotCoverageCurve(pairs)
print(p)
} # }